BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005E04SP1|AL425381
(570 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig380 331 8e-91
>3x_Contig380
Length = 1539
Score = 331 bits (164), Expect = 8e-91
Identities = 446/541 (82%), Gaps = 9/541 (1%)
Strand = Plus / Minus
Query: 3 tcggggaagattggagatggtsggtacatgaagaattttttgaacaaagtatcaagttgg 62
||||| ||||||||||||||| |||||| ||||||||||| |||||||||||||||| |
Sbjct: 636 tcgggcaagattggagatggtccgtacatcaagaattttttcaacaaagtatcaagttcg 577
Query: 63 ttgagatasttcgstagaagtatttgatgatgaattagaggggtaagtgcgggattggta 122
|||||||| |||| ||||||||||| ||||| |||| | || ||||||||| ||| ||
Sbjct: 576 ttgagatacttcgctagaagtatttcatgatcaattggcgg--taagtgcggcattccta 519
Query: 123 aaggatstgtttsattattsaagattttgaggcgcatgtgggcaaggaagtggttggaga 182
||| || | ||| |||||| |||||||||| | ||||| | ||||||||| |||||||
Sbjct: 518 aagcatctctttcattattcaagattttga--cccatgtcgccaaggaagtcgttggagc 461
Query: 183 ttsgttsgttacgttaacrrsaaatrgraataataaggagtattttggtgataggaaatt 242
|| ||| ||||||||||| | || |||||||||||||||||| ||||| ||||||
Sbjct: 460 ttcgttcgttacgttaaccccacatcccaataataaggagtattttcctgatacgaaatt 401
Query: 243 tgtggttacgaaaagagcagataggtttagaaatggggggtggaggtggtgaaggggaat 302
||||||||| |||||| |||||| |||| ||||| |||| || || || ||| |||||
Sbjct: 400 tgtggttaccaaaagaccagatacctttacaaatgccgggtcgacgtcgtcaagcggaat 341
Query: 303 taatgcgattggggaattgtttggcgccaaaagtttgatgttattgttatagtaatattg 362
|||| | ||||||||||| ||| | |||||||||| |||||||||||||||||||||||
Sbjct: 340 taatcc-attggggaattcttt--ccccaaaagtttcatgttattgttatagtaatattg 284
Query: 363 aggtttgattgaatagagatggttagggaatttgatgttgagtggtaaatgtatgatagg 422
|||||| |||| |||||||| |||||| ||||||| || | |||||||| | | ||||
Sbjct: 283 aggtttcattgcatagagatcgttaggccatttgatcttcactggtaaatct-tcatagc 225
Query: 423 gaggaggaaatgtgcggatgggtttagagtaaggtaagatagawaratattgaaagaaaa 482
||||| |||||||||||||| |||| |||||| ||| |||| | |||||| | |||||
Sbjct: 224 caggagcaaatgtgcggatggctttacagtaagctaacatagctagatattgcacgaaaa 165
Query: 483 agatgggagttgtttgtgaagaagttggtgatagaggaggtaaattaattggagtwgttg 542
||| ||||| ||| | |||| ||||||||| || |||||||||||||| ||| ||||
Sbjct: 164 cgatcggagtc-tttctccagaacttggtgatacagcaggtaaattaattgcagttgttg 106
Query: 543 a 543
|
Sbjct: 105 a 105
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3823
Number of Sequences: 1807
Number of extensions: 3823
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 570
length of database: 10,358,551
effective HSP length: 16
effective length of query: 554
effective length of database: 10,329,639
effective search space: 5722620006
effective search space used: 5722620006
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.5 bits)